PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC07G19440.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family LBD
Protein Properties Length: 237aa    MW: 24421.7 Da    PI: 6.7172
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC07G19440.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26091.88.2e-2918118196
           DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 
                      +C++C+vlr++C+++Cvl+p++     +++q +++ +v+k+FG++ ++++l+a+pe +r ++++sl+yeA  r+ +Pv Gavg++++++++l+q
  OPUNC07G19440.1  18 SCNGCRVLRKGCSEGCVLRPCLqwidgAEAQGHATVFVAKFFGRAGLMSFLTAVPEPQRAAVFQSLLYEAAGRTINPVGGAVGLLSAGSWHLCQ 111
                      6*********************9999888999************************************************************** PP

           DUF260  90 lkaelal 96 
                      ++++++l
  OPUNC07G19440.1 112 AAVDTVL 118
                      *999876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089118.417123IPR004883Lateral organ boundaries, LOB
PfamPF031954.5E-2518116IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MAELEVEAVS VWATSAMSCN GCRVLRKGCS EGCVLRPCLQ WIDGAEAQGH ATVFVAKFFG  60
RAGLMSFLTA VPEPQRAAVF QSLLYEAAGR TINPVGGAVG LLSAGSWHLC QAAVDTVLRG  120
GGIQPLPDQV DAAAGGRDVF ASTGRRAVGG CSTFSTAKRS TMTTKNPGTV HDAAAAPQPE  180
PSCDLGLWLS PCSPPAPGDR RSGGRRAGTP SMNSEGSITT CGDGAGEREP ELLNLFV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0698130.0AK069813.1 Oryza sativa Japonica Group cDNA clone:J023030F23, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015647207.11e-139PREDICTED: LOB domain-containing protein 37
SwissprotQ9FN118e-69LBD37_ARATH; LOB domain-containing protein 37
TrEMBLA0A0E0LMV41e-172A0A0E0LMV4_ORYPU; Uncharacterized protein
STRINGORGLA07G0157700.11e-139(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40843675
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67420.15e-70LOB domain-containing protein 37